#############  Start of Description of junction: j41
# Number of strands:
NUM_STRANDS = 4
LILLEY = 2HS6HS4HS4
FINGERPRINT = 22:46:63:81:103:124
LOOP_LENGTH_SUM = 14
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  1235
S1_NAME_ID3 = 1242
S1_NUM_ID5_ORIG =  1235
S1_NUM_ID3_ORIG = 1242
S1_NAME2_ID5 =  1236
S1_NAME2_ID3 = 1241
S1_NUM2_ID5_ORIG =  1236
S1_NUM2_ID3_ORIG = 1241
S1_SQ2 = ACAAUG
S1_SQLEN2 = 6
S1_SQ = UACAAUGC
S1_SQLEN = 8
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  943
S2_NAME_ID3 = 946
S2_NUM_ID5_ORIG =  943
S2_NUM_ID3_ORIG = 946
S2_NAME2_ID5 =  944
S2_NAME2_ID3 = 945
S2_NUM2_ID5_ORIG =  944
S2_NUM2_ID3_ORIG = 945
S2_SQ2 = GG
S2_SQLEN2 = 2
S2_SQ = UGGA
S2_SQLEN = 4
S2_CHAR = A
## Properties of strand 3
S3_NAME_ID5 =  1295
S3_NAME_ID3 = 1304
S3_NUM_ID5_ORIG =  1295
S3_NUM_ID3_ORIG = 1304
S3_NAME2_ID5 =  1296
S3_NAME2_ID3 = 1303
S3_NUM2_ID5_ORIG =  1296
S3_NUM2_ID3_ORIG = 1303
S3_SQ2 = CCCAGUUC
S3_SQLEN2 = 8
S3_SQ = GCCCAGUUCG
S3_SQLEN = 10
S3_CHAR = A
## Properties of strand 4
S4_NAME_ID5 =  1333
S4_NAME_ID3 = 1340
S4_NUM_ID5_ORIG =  1333
S4_NUM_ID3_ORIG = 1340
S4_NAME2_ID5 =  1334
S4_NAME2_ID3 = 1339
S4_NUM2_ID5_ORIG =  1334
S4_NUM2_ID3_ORIG = 1339
S4_SQ2 = GCCGGA
S4_SQLEN2 = 6
S4_SQ = AGCCGGAA
S4_SQLEN = 8
S4_CHAR = A
## Properties of helix 1
H1_INID = 1
H1_OUTID = 4
H1_INID2 = 2
H1_OUTID2 = 3
H1_INID2_ORIG = 1236
H1_OUTID2_ORIG = 945
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = A
# Position:
H1_P_X = -88.64419569446298
H1_P_Y = 120.01672642125796
H1_P_Z = 85.05556614569734
# Orientation:
H1_DX_X = -0.29423214199628944
H1_DX_Y = 0.5240640385650153
H1_DX_Z = 0.7992398451648768
H1_DY_X = -0.9505892515010714
H1_DY_Y = -0.07381698042750884
H1_DY_Z = -0.30154788729355175
H1_DZ_X = -0.09903293162838622
H1_DZ_Y = -0.8484738869779562
H1_DZ_Z = 0.5198889704250291
## Properties of helix 2
H2_INID = 1
H2_OUTID = 8
H2_INID2 = 2
H2_OUTID2 = 7
H2_INID2_ORIG = 1296
H2_OUTID2_ORIG = 1241
H2_INSEQ_CHAR = A
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = -107.98894928523784
H2_P_Y = 139.57233539687468
H2_P_Z = 71.95705187143068
# Orientation:
H2_DX_X = 0.30966776268299157
H2_DX_Y = -0.590578495217386
H2_DX_Z = 0.745199917969444
H2_DY_X = -0.898665847677151
H2_DY_Y = 0.07427019104858346
H2_DY_Z = 0.4323003966460277
H2_DZ_X = -0.31065345801007993
H2_DZ_Y = -0.8035552126073071
H2_DZ_Z = -0.5077336401283787
## Properties of helix 3
H3_INID = 1
H3_OUTID = 10
H3_INID2 = 2
H3_OUTID2 = 9
H3_INID2_ORIG = 1334
H3_OUTID2_ORIG = 1303
H3_INSEQ_CHAR = A
H3_OUTSEQ_CHAR = A
# Position:
H3_P_X = -105.96547188141338
H3_P_Y = 128.20411837053254
H3_P_Z = 92.43618227444169
# Orientation:
H3_DX_X = 0.45281892620130293
H3_DX_Y = -0.06690475417204311
H3_DX_Z = -0.889088732322648
H3_DY_X = 0.763705685402627
H3_DY_Y = -0.48549762100780924
H3_DY_Z = 0.4254946369573531
H3_DZ_X = -0.4601180784946308
H3_DZ_Y = -0.8716741443136584
H3_DZ_Z = -0.16874697027638774
## Properties of helix 4
H4_INID = 1
H4_OUTID = 8
H4_INID2 = 2
H4_OUTID2 = 7
H4_INID2_ORIG = 944
H4_OUTID2_ORIG = 1339
H4_INSEQ_CHAR = A
H4_OUTSEQ_CHAR = A
# Position:
H4_P_X = -78.34769990064464
H4_P_Y = 129.05588841251117
H4_P_Z = 82.89123450644438
# Orientation:
H4_DX_X = 0.6528629629964229
H4_DX_Y = -0.6426131321130981
H4_DX_Z = 0.40102158792679177
H4_DY_X = -0.47756063577823227
H4_DY_Y = -0.7601350442579076
H4_DY_Z = -0.4406024893780369
H4_DZ_X = 0.5879675082031639
H4_DZ_Y = 0.09614092222781778
H4_DZ_Z = -0.8031507532029991
#############  END of Description of junction: j41