#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 5
LILLEY = 3HS2HS5HS2
FINGERPRINT = 34:63:73:74:107:108:112:113:122:175
LOOP_LENGTH_SUM = 9
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  104
S1_NAME_ID3 = 114
S1_NUM_ID5_ORIG =  104
S1_NUM_ID3_ORIG = 114
S1_NAME2_ID5 =  106
S1_NAME2_ID3 = 112
S1_NUM2_ID5_ORIG =  106
S1_NUM2_ID3_ORIG = 112
S1_SQ2 = CGGACGG
S1_SQLEN2 = 7
S1_SQ = GGCGGACGGGU
S1_SQLEN = 11
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  56
S2_NAME_ID3 = 63
S2_NUM_ID5_ORIG =  56
S2_NUM_ID3_ORIG = 63
S2_NAME2_ID5 =  58
S2_NAME2_ID3 = 61
S2_NUM2_ID5_ORIG =  58
S2_NUM2_ID3_ORIG = 61
S2_SQ2 = CAAG
S2_SQLEN2 = 4
S2_SQ = UGCAAGUC
S2_SQLEN = 8
S2_CHAR = A
## Properties of strand 3
S3_NAME_ID5 =  313
S3_NAME_ID3 = 318
S3_NUM_ID5_ORIG =  313
S3_NUM_ID3_ORIG = 318
S3_NAME2_ID5 =  315
S3_NAME2_ID3 = 316
S3_NUM2_ID5_ORIG =  315
S3_NUM2_ID3_ORIG = 316
S3_SQ2 = AC
S3_SQLEN2 = 2
S3_SQ = ACACUG
S3_SQLEN = 6
S3_CHAR = A
## Properties of strand 4
S4_NAME_ID5 =  335
S4_NAME_ID3 = 340
S4_NUM_ID5_ORIG =  335
S4_NUM_ID3_ORIG = 340
S4_NAME2_ID5 =  337
S4_NAME2_ID3 = 338
S4_NUM2_ID5_ORIG =  337
S4_NUM2_ID3_ORIG = 338
S4_SQ2 = GA
S4_SQLEN2 = 2
S4_SQ = CAGACU
S4_SQLEN = 6
S4_CHAR = A
## Properties of strand 5
S5_NAME_ID5 =  349
S5_NAME_ID3 = 356
S5_NUM_ID5_ORIG =  349
S5_NUM_ID3_ORIG = 356
S5_NAME2_ID5 =  351
S5_NAME2_ID3 = 354
S5_NUM2_ID5_ORIG =  351
S5_NUM2_ID3_ORIG = 354
S5_SQ2 = GCAG
S5_SQLEN2 = 4
S5_SQ = AGGCAGCA
S5_SQLEN = 8
S5_CHAR = A
## Properties of helix 1
H1_INID = 1
H1_OUTID = 8
H1_INID2 = 3
H1_OUTID2 = 6
H1_INID2_ORIG = 106
H1_OUTID2_ORIG = 61
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = A
# Position:
H1_P_X = -5.927553932624683
H1_P_Y = 97.79448719410544
H1_P_Z = -34.906209956389695
# Orientation:
H1_DX_X = -0.5675437122890319
H1_DX_Y = 0.6864452377810011
H1_DX_Z = 0.4546284968729637
H1_DY_X = 0.8225081343437441
H1_DY_Y = 0.4975615657595682
H1_DY_Z = 0.27552287966203437
H1_DZ_X = -0.03707429809931817
H1_DZ_Y = 0.5303069147264381
H1_DZ_Z = -0.8469947299799188
## Properties of helix 2
H2_INID = 1
H2_OUTID = 11
H2_INID2 = 3
H2_OUTID2 = 9
H2_INID2_ORIG = 315
H2_OUTID2_ORIG = 112
H2_INSEQ_CHAR = A
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = -24.6311928054583
H2_P_Y = 80.21805927976447
H2_P_Z = -9.44262609812328
# Orientation:
H2_DX_X = -0.16157788008251828
H2_DX_Y = -0.6793188774022525
H2_DX_Z = -0.7158340949361008
H2_DY_X = 0.5396906499161993
H2_DY_Y = -0.6681115344899808
H2_DY_Z = 0.5122118505799005
H2_DZ_X = -0.8262121949360655
H2_DZ_Y = -0.30356686295839097
H2_DZ_Z = 0.47457409184712596
## Properties of helix 3
H3_INID = 1
H3_OUTID = 6
H3_INID2 = 3
H3_OUTID2 = 4
H3_INID2_ORIG = 337
H3_OUTID2_ORIG = 316
H3_INSEQ_CHAR = A
H3_OUTSEQ_CHAR = A
# Position:
H3_P_X = -5.755911413965541
H3_P_Y = 72.96377584313161
H3_P_Z = -18.778895034060675
# Orientation:
H3_DX_X = -0.2962666896849999
H3_DX_Y = -0.7998868158234842
H3_DX_Z = 0.5219263649738792
H3_DY_X = 0.94969511764568
H3_DY_Y = -0.18863239514271868
H3_DY_Z = 0.2499940059735195
H3_DZ_X = -0.1015146890999663
H3_DZ_Y = 0.5697358171771185
H3_DZ_Z = 0.8155340989330035
## Properties of helix 4
H4_INID = 1
H4_OUTID = 6
H4_INID2 = 3
H4_OUTID2 = 4
H4_INID2_ORIG = 351
H4_OUTID2_ORIG = 338
H4_INSEQ_CHAR = A
H4_OUTSEQ_CHAR = A
# Position:
H4_P_X = -4.09390035408825
H4_P_Y = 63.432168469318846
H4_P_Z = -34.63662488584902
# Orientation:
H4_DX_X = -0.9868124062178749
H4_DX_Y = -0.16023386324503974
H4_DX_Z = 0.022943060041519914
H4_DY_X = -0.14936781857597303
H4_DY_Y = 0.8467946959289137
H4_DY_Z = -0.5105173823882296
H4_DZ_X = 0.06237411088226885
H4_DZ_Y = -0.5072118413604301
H4_DZ_Z = -0.8595612940770465
## Properties of helix 5
H5_INID = 1
H5_OUTID = 8
H5_INID2 = 3
H5_OUTID2 = 6
H5_INID2_ORIG = 58
H5_OUTID2_ORIG = 354
H5_INSEQ_CHAR = A
H5_OUTSEQ_CHAR = A
# Position:
H5_P_X = -24.547144459126457
H5_P_Y = 71.65350331292969
H5_P_Z = -29.884620295902973
# Orientation:
H5_DX_X = -0.6913469088042348
H5_DX_Y = 0.7224828703572257
H5_DX_Z = 0.00761273454207867
H5_DY_X = -0.03344999002842286
H5_DY_Y = -0.02147985900870708
H5_DY_Z = -0.999209544502083
H5_DZ_X = -0.7217482593355733
H5_DZ_Y = -0.691055075733729
H5_DZ_Z = 0.03901707893637152
#############  END of Description of junction: j1