############# Start of Description of junction: j2 # Number of strands: NUM_STRANDS = 2 LILLEY = HS1HS2 FINGERPRINT = 153 LOOP_LENGTH_SUM = 3 KISSING_LOOP = FALSE INTERNAL_HELICES = NULL ## Properties of strand 1 S1_NAME_ID5 = 14 S1_NAME_ID3 = 21 S1_NUM_ID5_ORIG = 14 S1_NUM_ID3_ORIG = 21 S1_NAME2_ID5 = 16 S1_NAME2_ID3 = 19 S1_NUM2_ID5_ORIG = 16 S1_NUM2_ID3_ORIG = 19 S1_SQ2 = GAAG S1_SQLEN2 = 4 S1_SQ = GUGAAGUC S1_SQLEN = 8 S1_CHAR = A ## Properties of strand 2 S2_NAME_ID5 = 28 S2_NAME_ID3 = 34 S2_NUM_ID5_ORIG = 28 S2_NUM_ID3_ORIG = 34 S2_NAME2_ID5 = 30 S2_NAME2_ID3 = 32 S2_NUM2_ID5_ORIG = 30 S2_NUM2_ID3_ORIG = 32 S2_SQ2 = CAC S2_SQLEN2 = 3 S2_SQ = GUCACAC S2_SQLEN = 7 S2_CHAR = B ## Properties of helix 1 H1_INID = 1 H1_OUTID = 7 H1_INID2 = 3 H1_OUTID2 = 5 H1_INID2_ORIG = 16 H1_OUTID2_ORIG = 32 H1_INSEQ_CHAR = A H1_OUTSEQ_CHAR = B # Position: H1_P_X = 34.60531717873247 H1_P_Y = 1.1729745717460158 H1_P_Z = 24.83961227691981 # Orientation: H1_DX_X = -0.7993862460253638 H1_DX_Y = 0.5986948075789158 H1_DX_Z = 0.05045945940576857 H1_DY_X = 0.5472490614460668 H1_DY_Y = 0.6908758805109418 H1_DY_Z = 0.472449978806889 H1_DZ_X = 0.24799212570538742 H1_DZ_Y = 0.40528390679408144 H1_DZ_Z = -0.8799118481313073 ## Properties of helix 2 H2_INID = 1 H2_OUTID = 8 H2_INID2 = 3 H2_OUTID2 = 6 H2_INID2_ORIG = 30 H2_OUTID2_ORIG = 19 H2_INSEQ_CHAR = B H2_OUTSEQ_CHAR = A # Position: H2_P_X = 30.615472544113864 H2_P_Y = -10.887185555832843 H2_P_Z = 41.134714255343084 # Orientation: H2_DX_X = -0.12010003143354098 H2_DX_Y = -0.6626681447615148 H2_DX_Z = -0.7392204761557934 H2_DY_X = 0.9926470342924851 H2_DY_Y = -0.09147902072184522 H2_DY_Z = -0.0792682412956367 H2_DZ_X = -0.015094626858381588 H2_DZ_Y = -0.7433051316156138 H2_DZ_Z = 0.6687822018818252 ############# END of Description of junction: j2