############# Start of Description of junction: j4 # Number of strands: NUM_STRANDS = 2 LILLEY = HS1HS2 FINGERPRINT = 140 LOOP_LENGTH_SUM = 3 KISSING_LOOP = FALSE INTERNAL_HELICES = NULL ## Properties of strand 1 S1_NAME_ID5 = 354 S1_NAME_ID3 = 361 S1_NUM_ID5_ORIG = 354 S1_NUM_ID3_ORIG = 361 S1_NAME2_ID5 = 356 S1_NAME2_ID3 = 359 S1_NUM2_ID5_ORIG = 356 S1_NUM2_ID3_ORIG = 359 S1_SQ2 = CAGU S1_SQLEN2 = 4 S1_SQ = ACCAGUAC S1_SQLEN = 8 S1_CHAR = A ## Properties of strand 2 S2_NAME_ID5 = 291 S2_NAME_ID3 = 297 S2_NUM_ID5_ORIG = 291 S2_NUM_ID3_ORIG = 297 S2_NAME2_ID5 = 293 S2_NAME2_ID3 = 295 S2_NUM2_ID5_ORIG = 293 S2_NUM2_ID3_ORIG = 295 S2_SQ2 = ACC S2_SQLEN2 = 3 S2_SQ = CGACCGU S2_SQLEN = 7 S2_CHAR = A ## Properties of helix 1 H1_INID = 1 H1_OUTID = 7 H1_INID2 = 3 H1_OUTID2 = 5 H1_INID2_ORIG = 356 H1_OUTID2_ORIG = 295 H1_INSEQ_CHAR = A H1_OUTSEQ_CHAR = A # Position: H1_P_X = 40.05661278130915 H1_P_Y = 128.94882139727883 H1_P_Z = 14.62836650466427 # Orientation: H1_DX_X = 0.11986786182196596 H1_DX_Y = -0.775719657467846 H1_DX_Z = 0.6195891450955386 H1_DY_X = 0.6141803066422824 H1_DY_Y = 0.5482717809290705 H1_DY_Z = 0.5676095534517245 H1_DZ_X = -0.780009132404885 H1_DZ_Y = 0.31250130760503225 H1_DZ_Z = 0.5421519031693247 ## Properties of helix 2 H2_INID = 1 H2_OUTID = 8 H2_INID2 = 3 H2_OUTID2 = 6 H2_INID2_ORIG = 293 H2_OUTID2_ORIG = 359 H2_INSEQ_CHAR = A H2_OUTSEQ_CHAR = A # Position: H2_P_X = 61.088916028706834 H2_P_Y = 119.90025204257121 H2_P_Z = 1.453230003077966 # Orientation: H2_DX_X = -0.942243215603817 H2_DX_Y = -0.3345461202620328 H2_DX_Z = 0.016019240500330767 H2_DY_X = -0.2296852098158766 H2_DY_Y = 0.6106139533622468 H2_DY_Z = -0.7578887150176916 H2_DZ_X = 0.24376715742777577 H2_DZ_Y = -0.7177948825235205 H2_DZ_Z = -0.6521871507340703 ############# END of Description of junction: j4