############# Start of Description of junction: k3 # Number of strands: NUM_STRANDS = 2 LILLEY = HS4HS9 FINGERPRINT = 56 LOOP_LENGTH_SUM = 13 KISSING_LOOP = TRUE INTERNAL_HELICES = NULL ## Properties of strand 1 S1_NAME_ID5 = 1465 S1_NAME_ID3 = 1477 S1_NUM_ID5_ORIG = 1465 S1_NUM_ID3_ORIG = 1477 S1_NAME2_ID5 = 1466 S1_NAME2_ID3 = 1476 S1_NUM2_ID5_ORIG = 1466 S1_NUM2_ID3_ORIG = 1476 S1_SQ2 = CUAUGGCUAUG S1_SQLEN2 = 11 S1_SQ = GCUAUGGCUAUGC S1_SQLEN = 13 S1_CHAR = A ## Properties of strand 2 S2_NAME_ID5 = 2679 S2_NAME_ID3 = 2686 S2_NUM_ID5_ORIG = 2679 S2_NUM_ID3_ORIG = 2686 S2_NAME2_ID5 = 2680 S2_NAME2_ID3 = 2685 S2_NUM2_ID5_ORIG = 2680 S2_NUM2_ID3_ORIG = 2685 S2_SQ2 = UACCAA S2_SQLEN2 = 6 S2_SQ = GUACCAAC S2_SQLEN = 8 S2_CHAR = A ## Properties of helix 1 H1_INID = 1 H1_OUTID = 13 H1_INID2 = 2 H1_OUTID2 = 12 H1_INID2_ORIG = 1466 H1_OUTID2_ORIG = 1476 H1_INSEQ_CHAR = A H1_OUTSEQ_CHAR = A # Position: H1_P_X = 22.850516828922284 H1_P_Y = 138.26568797058246 H1_P_Z = 193.06074899829903 # Orientation: H1_DX_X = 0.6377325085027259 H1_DX_Y = -0.7247452768377798 H1_DX_Z = -0.2608477166856744 H1_DY_X = -0.7474373094929163 H1_DY_Y = -0.5004505651515672 H1_DY_Z = -0.436905825341654 H1_DZ_X = 0.1861040461054415 H1_DZ_Y = 0.47359636352149437 H1_DZ_Z = -0.8608552540830487 ## Properties of helix 2 H2_INID = 1 H2_OUTID = 8 H2_INID2 = 2 H2_OUTID2 = 7 H2_INID2_ORIG = 2680 H2_OUTID2_ORIG = 2685 H2_INSEQ_CHAR = A H2_OUTSEQ_CHAR = A # Position: H2_P_X = 39.78940878702036 H2_P_Y = 124.20686816740792 H2_P_Z = 179.9745831633464 # Orientation: H2_DX_X = -0.36405309154707055 H2_DX_Y = -0.9060524737798801 H2_DX_Z = 0.21571801337020702 H2_DY_X = -0.766194392231796 H2_DY_Y = 0.15965946434195644 H2_DY_Z = -0.6224588410156855 H2_DZ_X = 0.529538950264822 H2_DZ_Y = -0.3918899975801935 H2_DZ_Z = -0.7523368460663278 ############# END of Description of junction: k3