#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 4
LILLEY = 2HS1HS2HS5
FINGERPRINT = 75:91:95:99:164:165
LOOP_LENGTH_SUM = 8
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  24
S1_NAME_ID3 = 28
S1_NUM_ID5_ORIG =  24
S1_NUM_ID3_ORIG = 28
S1_NAME2_ID5 =  25
S1_NAME2_ID3 = 27
S1_NUM2_ID5_ORIG =  25
S1_NUM2_ID3_ORIG = 27
S1_SQ2 = CAC
S1_SQLEN2 = 3
S1_SQ = GCACC
S1_SQLEN = 5
S1_CHAR = B
## Properties of strand 2
S2_NAME_ID5 =  6
S2_NAME_ID3 = 11
S2_NUM_ID5_ORIG =  6
S2_NUM_ID3_ORIG = 11
S2_NAME2_ID5 =  7
S2_NAME2_ID3 = 10
S2_NUM2_ID5_ORIG =  7
S2_NUM2_ID3_ORIG = 10
S2_SQ2 = AUCG
S2_SQLEN2 = 4
S2_SQ = UAUCGC
S2_SQLEN = 6
S2_CHAR = B
## Properties of strand 3
S3_NAME_ID5 =  42
S3_NAME_ID3 = 50
S3_NUM_ID5_ORIG =  42
S3_NUM_ID3_ORIG = 50
S3_NAME2_ID5 =  43
S3_NAME2_ID3 = 49
S3_NUM2_ID5_ORIG =  43
S3_NUM2_ID3_ORIG = 49
S3_SQ2 = GCAUUCC
S3_SQLEN2 = 7
S3_SQ = GGCAUUCCG
S3_SQLEN = 9
S3_CHAR = B
## Properties of strand 4
S4_NAME_ID5 =  64
S4_NAME_ID3 = 67
S4_NUM_ID5_ORIG =  64
S4_NUM_ID3_ORIG = 67
S4_NAME2_ID5 =  65
S4_NAME2_ID3 = 66
S4_NUM2_ID5_ORIG =  65
S4_NUM2_ID3_ORIG = 66
S4_SQ2 = GU
S4_SQLEN2 = 2
S4_SQ = CGUA
S4_SQLEN = 4
S4_CHAR = B
## Properties of helix 1
H1_INID = 1
H1_OUTID = 6
H1_INID2 = 2
H1_OUTID2 = 5
H1_INID2_ORIG = 25
H1_OUTID2_ORIG = 10
H1_INSEQ_CHAR = B
H1_OUTSEQ_CHAR = B
# Position:
H1_P_X = 19.827730979777375
H1_P_Y = 18.89149162772258
H1_P_Z = 29.621897468095703
# Orientation:
H1_DX_X = 0.9761268460544734
H1_DX_Y = -0.08025730317542212
H1_DX_Z = 0.2018294966023504
H1_DY_X = 0.1994774947417639
H1_DY_Y = -0.03640009852466264
H1_DY_Z = -0.9792261035730938
H1_DZ_X = 0.08593665983326204
H1_DZ_Y = 0.9961093304022413
H1_DZ_Z = -0.019521587596788237
## Properties of helix 2
H2_INID = 1
H2_OUTID = 5
H2_INID2 = 2
H2_OUTID2 = 4
H2_INID2_ORIG = 43
H2_OUTID2_ORIG = 27
H2_INSEQ_CHAR = B
H2_OUTSEQ_CHAR = B
# Position:
H2_P_X = 17.6890922686504
H2_P_Y = 3.164285503827326
H2_P_Z = 25.674185354193813
# Orientation:
H2_DX_X = 0.19522066041298558
H2_DX_Y = -0.00534624947577278
H2_DX_Z = 0.9807447738145036
H2_DY_X = -0.9667725470945143
H2_DY_Y = -0.16932901111548126
H2_DY_Z = 0.19151639141087173
H2_DZ_X = 0.16504464829950294
H2_DZ_Y = -0.9855450794414207
H2_DZ_Z = -0.03822512860013916
## Properties of helix 3
H3_INID = 1
H3_OUTID = 9
H3_INID2 = 2
H3_OUTID2 = 8
H3_INID2_ORIG = 65
H3_OUTID2_ORIG = 49
H3_INSEQ_CHAR = B
H3_OUTSEQ_CHAR = B
# Position:
H3_P_X = 20.63416099827376
H3_P_Y = 38.11319377037687
H3_P_Z = 37.02801738093531
# Orientation:
H3_DX_X = 0.1319397149141217
H3_DX_Y = -0.698953287645125
H3_DX_Z = 0.7028913239743773
H3_DY_X = 0.021566337139155678
H3_DY_Y = 0.7109466084139129
H3_DY_Z = 0.7029152246801544
H3_DZ_X = -0.9910231100891558
H3_DZ_Y = -0.07758364308807586
H3_DZ_Z = 0.1088759550791707
## Properties of helix 4
H4_INID = 1
H4_OUTID = 4
H4_INID2 = 2
H4_OUTID2 = 3
H4_INID2_ORIG = 7
H4_OUTID2_ORIG = 66
H4_INSEQ_CHAR = B
H4_OUTSEQ_CHAR = B
# Position:
H4_P_X = 34.543935938722136
H4_P_Y = 38.76198170864422
H4_P_Z = 36.40960775023461
# Orientation:
H4_DX_X = -0.14520701160878957
H4_DX_Y = -0.7728852846928049
H4_DX_Z = 0.6177080706004787
H4_DY_X = 0.021489480856949683
H4_DY_Y = -0.6266415055415564
H4_DY_Z = -0.7790113129763299
H4_DZ_X = 0.989167895754882
H4_DZ_Y = -0.0998436790083872
H4_DZ_Z = 0.10760164389974136
#############  END of Description of junction: j1