RNAJunction Database - Junction Profile:9426
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 9426: 1YL3_j2_A-U858_A-A909

Primary Citation: (from PDB entry 1YL3)

L.JENNER P.ROMBY B.REES C.SCHULZE-BRIESE M.SPRINGER C.EHRESMANN B.EHRESMANN D.MORAS G.YUSUPOVA M.YUSUPOV TRANSLATIONAL OPERATOR OF MRNA ON THE RIBOSOME: HOW REPRESSOR PROTEINS EXCLUDE RIBOSOME BINDING. SCIENCE V. 308 120 2005

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

Click to launch 3D viewer Jmol | Larger 3D image | Created with Raster3D and RNAView

Derived Information
Type:Bulge LoopCluster:2J03 j2 A-U858 A-A909 
NC-IUBMB Classification:HS9HS9Cluster Page
Angles: 165°
Fit Criteria: A
Extracted Structure:Download
Minimized Structure:Download RMSD = 1.46914Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: CCUGUAGAGCACUGA 15nt

Strand 2: Chain A: UCAAACUCCGAAGGG 15nt

Valid XHTML 1.0 Transitional