RNAJunction Database - Junction Profile:6422
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 6422: 1VP0_j5_B-C593_B-A681_B-G822_B-G1209_B-A1260

Primary Citation: (from PDB entry 1VP0)

A.VILA-SANJURJO B.S.SCHUWIRTH C.W.HAU J.H.CATE STRUCTURAL BASIS FOR THE CONTROL OF TRANSLATION INITIATION DURING STRESS. NAT.STRUCT.MOL.BIOL. V. 11 1054 2004

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:5-wayCluster:1VOW j5 B-C593 B-A681 B-G822 B-G1209 B-A1260 
NC-IUBMB Classification:Cluster Page
Angles: 59:63:92:96:103:106:108:125:151:153°
Fit Criteria: C
Extracted Structure:Download
Minimized Structure:Download RMSD = 1.31279Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain B: UAGACU 6nt

Strand 2: Chain B: GCGACUUA 8nt

Strand 3: Chain B: AGUUCU 6nt

Strand 4: Chain B: AGCGUU 6nt

Strand 5: Chain B: AAGUGCGGAUGC 12nt

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