RNAJunction Database - Junction Profile:6406
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 6406: 1VP0_j2_B-U696_B-U786

Primary Citation: (from PDB entry 1VP0)

A.VILA-SANJURJO B.S.SCHUWIRTH C.W.HAU J.H.CATE STRUCTURAL BASIS FOR THE CONTROL OF TRANSLATION INITIATION DURING STRESS. NAT.STRUCT.MOL.BIOL. V. 11 1054 2004

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:Bulge LoopCluster:1NJO j2 0-U696 0-U786 
NC-IUBMB Classification:HS5HS20Cluster Page
Angles: 153°
Fit Criteria: A
Extracted Structure:Download
Minimized Structure:Download RMSD = 1.97352Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain B: UUUAGGAGUGAAAAGCUAACCGAACC 26nt

Strand 2: Chain B: GGUGAGCUAAG 11nt

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